2025

"A novel DNA repair protein, N-Myc downstream regulated gene 1 (NDRG1), links stromal tumour microenvironment to chemoresistance" Nina Kozlova, ..., Antoine A. Ruzette, ..., Simon F. Nørrelykke, ..., Taru Muranen bioRxiv Jan 2025 DOI: 10.1101/2025.01.22.634323
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"Global cellular proteo-lipidomic profiling of diverse lysosomal storage disease mutants using nMOST" Acknowledgement Science Advances Jan 2025 DOI: 10.1126/sciadv.adu5787
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2024

"The crucial role of bioimage analysts in scientific research and publication" Beth A Cimini, ..., Simon F. Nørrelykke, ..., Kevin W. Eliceiri Journal of Cell Science, Volume 137, Issue 20 Oct 2024 DOI: 10.1242/jcs.262322
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"Refinement of cryo-EM 3D maps with a self-supervised denoising model: crefDenoiser" Ishaant Agarwal, Joanna Kaczmar-Michalska, Simon F. Nørrelykke, Andrzej J Rzepiela IUCrJ, Volume 11, Issue 5 2024 DOI: 10.1107/s2052252524005918

2023

"Cholinergic neurons trigger epithelial Ca2+ currents to heal the gut" Acknowledgement Nature Sep 2023 DOI: 10.1038/s41586-023-06627-y
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"How Modifications of Corneal Cross-Linking Protocols Influence Corneal Resistance to Enzymatic Digestion and Treatment Depth" Malwina Kowalska, Elisa Mischi, Szymon Stoma, Simon F. Nørrelykke, Sonja Hartnack, Simon A. Pot Translational Vision Science \& Technology, Volume 12, Issue 5 2023 DOI: 10.1167/tvst.12.5.18

2022

"RNAi Screening Uncovers a Synthetic Sick Interaction between CtIP and the BARD1 Tumor Suppressor" Hella A. Bolck, ..., Simon F. Nørrelykke, ..., Antonio Porro Cells, Volume 11, Issue 4 2022 DOI: 10.3390/cells11040643
"Image quality measurements and denoising using Fourier Ring Correlations" J. Kaczmar-Michalska, N. R. Hajizadeh, A. J. Rzepiela, Simon F. Nørrelykke arXiv, Volume , Issue 2022
"Detecting variation in starch granule size and morphology by high-throughput microscopy and flow cytometry" Mercedes Thieme, Anton Hochmuth, Theresa Elisabeth Ilse, Jose A. Cuesta-Seijo, Szymon Stoma, Roger Meier, Simon F. Nørrelykke, Pai Rosager Pedas, Ilka Braumann, Samuel C. Zeeman Carbohydrate Polymers, Volume 299, Issue 2022 DOI: 10.1016/j.carbpol.2022.120169
"Posttranscriptional regulation of the human LDL receptor by the U2-Spliceosome" Paolo Zanoni, Grigorios Panteloglou, Alaa Othman, Joel T Haas, Roger Meier, Antoine Rimbert, Marta Futema, Yara Abou Khalil, Simon F Norrelykke, Andrzej J Rzepiela, others Circulation research, Volume 130, Issue 1, Pages 80--95 2022

2021

"Reproducible image handling and analysis" Kota Miura, Simon F. Nørrelykke The EMBO Journal, Volume 40, Issue 3 2021 DOI: 10.15252/embj.2020105889

2020

"The NEUBIAS Gateway: a hub for bioimage analysis methods and materials" Beth A. Cimini, Simon F. Nørrelykke, Marion Louveaux, Nataša Sladoje, Perrine Paul-Gilloteaux, Julien Colombelli, Kota Miura F1000Research, Volume 9, Issue 2020 DOI: 10.12688/f1000research.24759.1

2019

"Bidirectional Propagation of Signals and Nutrients in Fungal Networks via Specialized Hyphae" Stefanie S. Schmieder, Claire E. Stanley, Andrzej Rzepiela, Dirk van Swaay, Jerica Sabotič, Simon F. Nørrelykke, Andrew J. deMello, Markus Aebi, Markus Künzler Current Biology, Volume 29, Issue 2 2019 DOI: 10.1016/j.cub.2018.11.058
"A distinct role of the autonomic nervous system in modulating the function of lymphatic vessels under physiological and tumor-draining conditions" Samia B Bachmann, Denise Gsponer, Javier A Montoya-Zegarra, Martin Schneider, Felix Scholkmann, Carlotta Tacconi, Simon F. Noerrelykke, Steven T Proulx, Michael Detmar Cell reports, Volume 27, Issue 11, Pages 3305--3314 2019
"AutoTube: a novel software for the automated morphometric analysis of vascular networks in tissues" Javier A. Montoya-Zegarra, Erica Russo, Peter Runge, Maria Jadhav, Ann-Helen Willrodt, Szymon Stoma, Simon F. Nørrelykke, Michael Detmar, Cornelia Halin Angiogenesis, Volume 22, Issue 2 2019 DOI: 10.1007/s10456-018-9652-3

2018

"Quantitative spatial analysis of haematopoiesis-regulating stromal cells in the bone marrow microenvironment by 3D microscopy" Alvaro Gomariz, ..., Simon F. Nørrelykke, ..., César Nombela-Arrieta Nature Communications, Volume 9, Issue 1 2018 DOI: 10.1038/s41467-018-04770-z
"Mechanisms of tumor-induced lymphovascular niche formation in draining lymph nodes" Catharina D Commerford, Lothar C Dieterich, Yuliang He, Tanja Hell, Javier A Montoya-Zegarra, Simon F. Noerrelykke, Erica Russo, Rö Cell reports, Volume 25, Issue 13, Pages 3554--3563 2018

2017

"VEGF-A Regulates Cellular Localization of SR-BI as Well as Transendothelial Transport of HDL but Not LDL" Srividya Velagapudi, ..., Simon Flyvbjerg Nørrelykke, ..., Arnold von Eckardstein Arteriosclerosis, Thrombosis, and Vascular Biology, Volume 37, Issue 5 2017 DOI: 10.1161/atvbaha.117.309284

2016

"Bioimage data analysis" F. Cordelières, K. Miura, C. Möhl, C. Monzel, S Nørrelykke, ..., S. Tosi Viley-VCH, Verlag-GmbH, Volume 69469, Issue , Pages 2016

2011

"Harmonic oscillator in heat bath: Exact simulation of time-lapse-recorded data and exact analytical benchmark statistics" Simon F. Nørrelykke, Henrik Flyvbjerg Physical Review E, Volume 83, Issue 4 2011 DOI: 10.1103/physreve.83.041103

2010

"Power spectrum analysis with least-squares fitting: Amplitude bias and its elimination, with application to optical tweezers and atomic force microscope cantilevers" Simon F. Nørrelykke, Henrik Flyvbjerg Review of Scientific Instruments, Volume 81, Issue 7 2010 DOI: 10.1063/1.3455217
"The cytoskeleton: I-beams of the cell" Joshua Shaevitz, Simon Nørrelykke Physics Today, Volume 63, Issue 2 2010 DOI: 10.1063/1.3326997

2008

"Persistent Cell Motion in the Absence of External Signals: A Search Strategy for Eukaryotic Cells" Liang Li, Simon F. Nørrelykke, Edward C. Cox PLoS ONE, Volume 3, Issue 5 2008 DOI: 10.1371/journal.pone.0002093
"Cell motility as random motion: A review" D. Selmeczi, L. Li, L. I.I. Pedersen, Simon F. Nørrelykke, P. H. Hagedorn, S. Mosler, N. B. Larsen, E. C. Cox & H. Flyvbjerg The European Physical Journal Special Topics, Volume 157, Issue , Pages 1--15 2008

2007

"Surface Forces and Drag Coefficients of Microspheres near a Plane Surface Measured with Optical Tweezers" Erik Schäffer, Simon F. Nørrelykke, Jonathon Howard Langmuir, Volume 23, Issue 7 2007 DOI: 10.1021/la0622368
"Brownian Motion after Einstein: Some new applications and new experiments" D. Selmeczi, S. Nørrelykke, E. Schäffer, P.H. Hagedorn, S. Mosler, K. Berg-Sørensen, N.B. Larsen & H. Flyvbjerg Controlled Nanoscale Motion: Nobel Symposium 131, Volume , Issue , Pages 181--199 2007

2006

"Calibration of optical tweezers with positional detection in the back focal plane" Simon F. Tolić-Nørrelykke, Erik Schäffer, Jonathon Howard, Francesco S. Pavone, Frank Jülicher, Henrik Flyvbjerg Review of Scientific Instruments, Volume 77, Issue 10 2006 DOI: 10.1063/1.2356852
"Stepwise Bending of DNA by a Single TATA-Box Binding Protein" Simon F. Tolić-Nørrelykke, Mette B. Rasmussen, Francesco S. Pavone, Kirstine Berg-Sørensen, Lene B. Oddershede Biophysical Journal, Volume 90, Issue 10 2006 DOI: 10.1529/biophysj.105.074856

2004

"Diversity in the Rates of Transcript Elongation by Single RNA Polymerase Molecules*" Simon F. Tolić-Nørrelykke, Anita M. Engh, Robert Landick, Jeff Gelles Journal of Biological Chemistry, Volume 279, Issue 5 2004 DOI: 10.1074/jbc.m310290200

2002

"Self-organized critical system with no stationary attractor state" Simon F. Nørrelykke, Per Bak Physical Review E, Volume 65, Issue 3 2002 DOI: 10.1103/physreve.65.036147

2000

"Optical Tweezers: Probing Biological Surfaces" Lene Oddershede, Sonia Grego, Simon F. Nørrelykke, Kirstine Berg-Sørensen Probe Microscopy, Volume , Issue 2000

1999

"Dynamics of money" Per Bak, Simon F. Nørrelykke, Martin Shubik Physical Review E, Volume 60, Issue 3 1999 DOI: 10.1103/physreve.60.2528